News2012-2016

2016

2016/11/01Publication
The paper on the MD simulations of a bacterial cytoplasm has been published in eLife.
2016/10/01Announce
Dr.Yasuhiro Matsunaga has been adopted to the JST PRESTO “Development and application of intelligent measurement-analysis methods through coalition between measurement technologies and information sciences”.
2016/09/15Publication
The paper by Dr. Jaewoon Jung has been published in J. Chem. Theory Comput.
2016/09/01Award
Dr. Yasuhiro Matsunaga won the “Young Scientist Award” in 16th  Annual Meeting of the Protein Science Society of Japan.
2016/09/01Award
Dr. Chigusa Kobayashi won the 7th research incentive awards in RIKEN.
2016/07/29Announce
Seminar Announcement : Prof. Yuko Okamoto (Nagoya University), Prof. Charles L. Brooks III (University of Michigan), Prof. John Straub (Boston University) Aug. 4th, 2016 (Kobe, AICS)
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2016/07/29Announce
GENESIS 1.1.0 has just been released!
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2016/07/29Announce
GENESIS website has been renewed!
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2016/04/01People
Dr. Koichi Tamura has joined to our group.

2015

2015/08/04Announce
Laboratory moved to RIKEN Integrated Innovation Building (IIB).
2015/06/18Announce
Seminar Announcement : Dr. Karissa Sanbonmatsu (Los Alamos National Laboratory, USA) Jun 18th, 2015 (IMDA)
2015/05/08Publication
The paper on GENESIS (WIREs Computational Molecular Science) has been press released.
2015/05/08Announce
A new version of GENESIS has been released.
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2015/04/01People
Dr. Motoshi Kamiya (Postdoctoral Researcher) joined our group.
2015/03/18Seminar
Dr. Sugita and Dr. Taiji organize the simposium “Large-scale biological simulations using supercomputers”.
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2015/02/10Publication
“Hierarchical domain-motion analysis of conformational changes in sarcoplasmic reticulum Ca2+-ATPase” was published in Proteins: Struct. Funct. Bioinf.

2014

2014/05/30Announce
Training of GENESIS will be held on Jun. 17th, 2014 (Kobe, AICS).
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2014/04/01People
Dr. Raimondas Galvelis (Postdoctoral Researcher) moved to Theoretical Molecular Science Laboratory, RIKEN.
2014/03/31Announce
Our new MD software GENESIS has been released under GPLv2 license.
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2014/01/09Seminar
Dr. Yasushi Okada (RIKEN QBiC) gave a seminar in Kobe.
2014/01/08Seminar
Prof. Akihiro Kusumi (Kyoto Univ.) gave a seminar in Kobe.

2013

2013/12/02Seminar
We attended the 4th AICS International Symposium.
2013/11/21Seminar
Dr. Sugita organized “Workshop on Molecular Simulations of Biophysics and Biochemistry”.
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2013/11/14Publication
“Surface-Tension Replica-Exchange Molecular Dynamics Method for Enhanced Sampling of Biological Membrane Systems” was published in J. Chem. Theory Comput.
2013/10/31Seminar
Dr. Sugita organized “Workshop on Modeling Biomolecular Systems in Cellular Environment”.
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2013/10/30Publication
“Efficient lookup table using a linear function of inverse distance squared” was published in J. Comput. Chem.
2013/10/29Seminar
Dr. Sugita organized a symposium at the 51th Annual Meeting of the Biophysical Society of Japan.
2013/09/05Seminar
Dr. Takeshi Sato (Osaka Univ.) gave a seminar in Kobe.
2013/04/01People
Dr. Chigusa Kobayashi (Research Scientist) joined our group.
2013/03/31People
Dr. Ryuhei Harada (Postdoctoral Researcher) moved to Programming Environment Research Team, RIKEN AICS.
2013/02/28Seminar
We attended the 3rd AICS International Symposium.
2013/02/12Publication
“Reduced Native State Stability in Crowded Cellular Environment Due to Protein–Protein Interactions” was published in J. Am. Chem. Soc.
2013/01/24Publication
“Improved constrained optimization method for reaction-path determination in the generalized hybrid orbital quantum mechanical/molecular mechanical calculations” was published in J. Chem. Phys.

2012

2012/12/17Announce
We are looking for a few postdoctoral fellows, research scientists, (or Senior Scentists). (closed)
2012/11/10Seminar
We attended SC12. (Salt Lake City)
2012/10/01People
Dr. Raimondas Galvelis (Postdoctoral Researcher) joined our gruop.
2012/10/01Announce
A new homepage of Computational Biophysics Research Team is opened.
2012/09/23Seminar
Dr. Sugita organized a symposium at the 50th Annual Meeting of the Biophysical Society of Japan.
2012/06/07Publication
“Minimum Free Energy Path of Ligand-Induced Transition in Adenylate Kinase” was published in PLoS Comput. Biol.
2012/05/31Seminar
Dr. Kohsuke Inomata (RIKEN QBiC) gave a seminar in Kobe.
2012/04/05Seminar
Dr. Yasuhito Karino (Kyoto University) gave a seminar in Kobe.
2012/02/21Publication
“Protein Crowding Affects Hydration Structure and Dynamics” was published in J. Am. Chem. Soc.
2012/01/18Seminar
Our laboratory moved to the IMDA building.